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GENETIS
GENETIS
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Tue Feb 3 15:12:09 2026
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<p>The following items from our to-do list have been successfully completed. Below this list, you can find the remaining urgent items for our proposal due date of 1/28 (items must be completed with plenty of time to spare). </p> <h3><u><strong>Completed items: </strong></u></h3> <p><em><span style="background-color:#FFFF00">*Note* please check the highlighted item. This one still must be verified. </span></em></p> <ol> <li>Made software plot Theta VS Gen</li> <li>Fixed current L and R plots <ol> <li>These now have correct axis labels, a legend, and connect data for each individual between generations.</li> </ol> </li> <li>Produced Veff for ARA's actual bicone parameters. <ol> <li>Made XF_Loop.sh submit a job for the ARA gain AraSim input file in BiconeEvolutionOSC/AraSim/Ara_Bicone6in_outputs.txt</li> <li><span style="background-color:#FFFF00">STILL MUST: Make sure that the "wait function" has been properly edited to consider the submission of this extra job in the first iteration of the loop. (Not sure if $NPOP+1 instead of $NPOP fixed it correctly) ----><strong> CADE SHOULD LOOK AT THIS</strong> :)</span></li> </ol> </li> <li>Added plotting software for V<sub>eff</sub> VS Generation (includes ARA's actual bicone V<sub>eff</sub> as generated in #3).</li> <li>Fixed the ARA hole constraint in fitnessFunction_ARA.cpp -- ie fixed the calculation to consider the correct radius "r". See <a href="http://radiorm.physics.ohio-state.edu/elog/GENETIS/28">http://radiorm.physics.ohio-state.edu/elog/GENETIS/28</a> for details. </li> <li>Successfully made energy a variable in setup.txt. <ol> <li>used the same "sed" format as before in the bash script (XF_Loop.sh).</li> </ol> </li> <li>Pushed to Github. </li> </ol> <p> </p> <h3><u><strong>Items to still do:</strong></u></h3> <ol> <li>Save CAD models in XF<strong><em>: Due 1/15 </em></strong> ------><strong><span style="background-color:#FFA07A">(Cade-- second most urgent one)</span></strong></li> <li><s>Stop plots from popping up during run: <strong><em>Due 1/15 </em></strong> ------><strong><span style="background-color:#FFA07A">(Alex P.)</span></strong></s></li> <li>Add "save state" idea to loop: <strong><em>Due 1/15 </em></strong> ------> <strong><span style="background-color:#FFA07A">(Cade and maybe Alex P can help -- This is the m</span><span style="background-color:#FFA07A">ost urgent one</span><span style="background-color:#FFA07A">)</span></strong></li> <li>Figure out why fitnessFunction_ARA.cpp isn't plotting: <strong><em>Due 1/15 </em></strong>------><strong><em> </em></strong><span style="background-color:#FFA07A"> </span><strong><span style="background-color:#FFA07A">(Julie, and Alex M)</span></strong></li> <li>Run the loop and evolve for results: <strong><em>Due 1/24 </em></strong> ------><strong><span style="background-color:#FFA07A">(Alex M, Mitchell, Cade)</span></strong></li> <li>Write proposal: <strong><em>Final Due 1/28 </em></strong> ------> <strong><span style="background-color:#FFA07A">(Amy, Kai, Julie)</span></strong></li> </ol> <p> </p> <h4><strong>Note that the people running the loop (<span style="background-color:#FFA07A">Alex M, Mitchell, Cade) </span>should be producing plots and saving them. Please save all plots in this dropbox folder: <a href="https://www.dropbox.com/home/GP_Antennas/NSF%20Proposal%20Plots%20(1_28_2020)">https://www.dropbox.com/home/GP_Antennas/NSF%20Proposal%20Plots%20(1_28_2020)</a></strong></h4> <h4><strong>When submitting plots, please make a new folder in there and label it "Date_of_run, Energy, Generations, Individuals". For example, my folder within this dropbox link would be: "1_10, 10^19, 10, 5". I have made sample folders in this dropbox link if needed. </strong></h4> <h4><strong>You can export the plots from OSC to your machine (using CP command) or can type "display NameOfPlot.png" then screenshot and crop your plot to upload to dropbox.</strong></h4>
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