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GENETIS
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Tue Feb 3 15:12:10 2026
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<h2><strong>Today's Summer 2020 daily update:</strong></h2> <p> </p> <p>Learn how to use the final part of the loop</p> <table border="1" cellpadding="1" cellspacing="1"> <tbody> <tr> <td>Name</td> <td>Update for Today</td> <td>Plans for Tomorrow</td> </tr> <tr> <td>Alex M.</td> <td> <p>Currently running the loop without the database to change the fix Alex and I made for XF to properly place data in the simulation folders. It looks to us like this was a problem that needed to be fixed. I'm running with the specific seed set in the roulette algorithm so we can replicate the results. I showed Evelyn and Ryan how to run the code today. Ryan was able to get a Pitzer Desktop, so until we can figure out how to get his X11 forwarding to work for XF, that will be a temporary fix. The only drawback is that Pitzer desktops require a GPU, so wait times can be high. I started this run by having him screenshare on zoom and then guiding him through running the loop. We got through the submission of the first batch of XF jobs (and also found some errors, so we had a chance to demonstrate fixing those).</p> </td> <td> <p>My goal is to get several generations of this run done so that I have enough data to see if my fix worked. If so, I'm going to implement it in the database version and we'll perform a test with that. I'm meeting with Evelyn and Ryan at 1:30 to discuss the loop again, so I'll try to have a run going near where we left off today so they can see the rest. Once we know that we've fixed this XF problem we should be ready to fully implement the database by merging with the master branch.</p> </td> </tr> <tr> <td>Alex P. </td> <td>Implemented some changes to get graphs working and automatically submitted all 5 graphs requested for to dropbox, then helped Alex M debug his changes and helped him show Evelyn and Ryan the loop. While Alex M ran to test the changes, helped Eliot and Leo with their pointer problem and fixed it so it doesn't give an error but they still need to make some changes to get it functioning how they want. </td> <td>Continue to help Alex M with fixing the XF simulationNumber issue and make sure the graphs are all valid and uploading properly. After we get confirmation that our XF fix is working we will implement it to the database version too.</td> </tr> <tr> <td>Leo</td> <td>Me and Eliot continued work on the 2 chromosome method. We were successful at fixing our pointing/vector issue, but we have a new error with the data_read function within the GA.</td> <td>Tomorrow we will meet with Julie to flush out the issue with data_read.</td> </tr> <tr> <td>Eliot</td> <td> <p>Continued working on the erros with the roulette alg. I have gotten the code to a running state, however the data is not outputting correctly. I believe this is an issue within the roulette function or dataread function. </p> </td> <td> <p>I will further investigate roulette and dataread function and meet with Julie to do so. </p> </td> </tr> <tr> <td>Evelyn</td> <td>Learned how to run the updated version of the loop and about the database, but we weren't able to get through an entire generation. <p> </p> </td> <td>Learn how to use the final part of the loop. </td> </tr> <tr> <td>Ryan</td> <td>I found a workaround (using a Pitzer desktop until I can fix the error with my machine's Linux subsystem) to my previous issue and was able to do two runs of the loop. </td> <td> <p>Alex M. Plans on helping me finish learning how to run the loops.</p> <p> </p> </td> </tr> </tbody> </table>
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