 Mon Aug 10 16:12:28 2020, Alex M, Daily Update 8/10/20
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Name
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Plans for Tomorrow
Alex
M
Over the weekend I tried making some fixes we discussed. I fixed the roulette algorithm (the symmetric version) so that the random number
generator is only set once and then passed to functions. It will now print the values in the generator to files to be plotted. I tried running the loop |
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Fri Aug 7 14:16:01 2020, Alex M, Daily Update 8/7/20
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Name
Update
Plans for Monday
Alex
M
Alex P |
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Wed Aug 5 16:08:40 2020, Alex M, Daily Update 8/5/20
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Name
Update
Plans for Tomorrow
Alex
M
Continued running the loop up to gen 15. I also adjusted the LRTPlot script so that it can slightly spread the points along the
generation axis so that you can see overlapping points, but I still need to implement this in the loop. |
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Tue Aug 4 17:30:09 2020, Alex M, Daily Update 8/4/20
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Name
Update
Plans for tomorrow
Alex
M
I've continued the run I started yesterday. I ran into a bug where the LRT plots weren't being made but it should be fixed now.
The loop is on generation 10, but it hasn't really converged or shown a clear pattern. We'll keep this run going until at least gen 15 probably.
If |
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Mon Aug 3 16:39:56 2020, Alex M, Daily Update 8/3/20
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Name
Update
Plans for Tomorrow
Alex
M
I fixed the issues I outlined a little while ago that we needed to resolve before starting a real run. I started a real run with 10 individuals
for up to 20 generations using the database for a symmetric bicone. The name of the run is Machtay_20200803_Master_Symmetric_Database_Real (whew!). Right |
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Thu Jul 30 15:36:54 2020, Alex M, Daily Update 7/30/20
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Name
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Plans for Tomorrow
Alex
M
Tested the database setting for the symmetric loop. It ran well and gave correct results, so all that's left to test is the
asymmetric loop (going to start that momentarily). |
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Mon Jul 27 16:52:20 2020, Alex M, Daily Update 7/27/20
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Name
Update
Plans for Tomorrow
Aelx
M
Leo, Julie, and I merged the two dev branches (Antenna_Database and asymBicone) onto master. I think I resolved all of the conflicts
and successfully merged. I'm going to start testing by running each setting (original, database, and asymmetric) through generation 1 to make sure |
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Fri Jul 24 16:25:06 2020, Alex M, Daily Update 7/24/20
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Name
Update
Plans for Monday
Alex
M
Alex P
Eliot
Leo
Ryan
Evelyn
Ben
Ethan
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Thu Jul 23 16:44:05 2020, Alex M, Daily Update 7/23/20
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Name
Update
Plans for Tomorrow
Alex
M
Leo and I continued working on the roulette algorithm for the asymmetric bicone to try to get the evolved generations to match the
original and database ones. We went through the mutation part of the algorithm and made sure we were rrunning all of the random number sequences in the |
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Wed Jul 22 16:00:18 2020, Alex M, Daily Update 7/21/20
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Name
Update
Plans for Tomorrow
Alex
M
Leo and I worked on the roulette algorithm to figure out why the new individuals being formed are different in the asymmetric bicone version
of the loop than the original and database versions. We made some fixes, but we came across a complicated problem. Essentially, we think that the difference |
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Tue Jul 21 17:01:58 2020, Alex M, Daily Update 7/21/20
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Name
Update
Plans for tomorrow
Alex
M
I replaced AraSim on Eliot's user with the one we have on the shared space since I wasn't able to compile his yesterday. It compiled
correctly and I ran the loop but got the same results from last week (effective volumes that differed from the ones we got in the original and database |
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Mon Jul 20 17:01:35 2020, Alex M, Daily Update 7/20/20
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Name
Update
Plans for tomorrow
Alex
M
The arasim jobs I submitted over the weekend kept failing. I've been looking for the cause but I can't pinpoint it right
now. The issue arose on Friday when I overwrote the version of Report.cc on Eliot's user with the one we have on the databse branch (but I don't |
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Fri Jul 17 18:09:16 2020, Alex M, Daily Update 7/17/20
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Name
Update
Plans for Monday
Alex
M
We may have found the error in the asymmetric bicone. It appears there may have been two problems. First, the setup for the simulation_PEC.xmacro
script in the asymmetric version appears to have been slightly different in that the positions of the cones, relative to the positions of the coordinate |
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Thu Jul 16 15:18:32 2020, Alex Patton, Daily Update 7/16/20
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Name
Update
Plans for Tomorrow
Alex
M
(See below the table for a review of the past couple of days since ELOG has been down.)
We may have found what was causing the error in Eliot and Leo's version. They were getting 0 effective volumes. I edited their output macroskeletons |
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Mon Jul 13 15:35:06 2020, Alex Patton, Daily Update 7/13/20
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Name
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Plans for Tomorrow
Alex
M
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Mon Jul 13 15:34:40 2020, Alex M, Daily Update 7/13/20
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Name
Update
Plans for Tomorrow
Alex
M
Alex and I continued running the loop for the database test. We ran into an error over the weekend that was affecting generations
after gen 0. Alex fixed it this morning and continued the run. |
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Fri Jul 10 16:35:26 2020, Alex M, Daily Update 7/10/20
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Name
Update
Plans for Monday
Alex
M
Yesterday we started a run of the database version of the loop. The goal was to use it to replicate the results from the run we
finished yesterday using the same parameters (NPOP=8, SEEDS=10, bicone separation = 0.05 cm). We initially ran into problems with the databse which we |
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Thu Jul 9 16:54:27 2020, Alex M, Daily Update 7/9/20
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Name
Update
Plans for Tomorrow
Alex
M
Finished running the loop for 15 generations. The last plots are on Dropbox under Length_Cutoff_Test_3. There are three things to
fix before running this version of the loop again. See below the table. |
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Wed Jul 8 15:09:42 2020, Alex Patton, Daily Update 7/8/20
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Name
Update for Today
Plans for Tomorrow
Alex
M
Continued the run from yesterday. Alex P and I applied the changes we made to the bash script for fixing the bugs we found in the
simulation number to the database version. Once we get 15 generations of data for this run we'll start testing the database version. Once that works |
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Tue Jul 7 14:39:12 2020, Alex Patton, Daily Update 7/7/20
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Name
Update for Today
Plans for Tomorrow
Alex
M
Found a bug while running the loop, fixed it and starting running again. Added a few things to the paper.
Alex and I will keep the loop running tomorrow. We're gonna try to meet with Eliot and Leo to work on implementing the bug fixes |