Follow the instructions in the attached "getting_started_with_ara.pdf" file to download AraSim, compile it, generate results, and plot those results.

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## Makefile -- New Version of my Makefile that works on both linux
##              and mac os x
## Ryan Nichol <rjn@hep.ucl.ac.uk>
##############################################################################
##############################################################################
##############################################################################
##
##This file was copied from M.readGeom and altered for my use 14 May 2014
##Khalida Hendricks.
##
##Modified by Brian Clark for use on plotting_example on 28 April 2016
##
##Changes:
##line 54 - OBJS = .... add filename.o      .... del oldfilename.o
##line 55 - CCFILE = .... add filename.cc     .... del oldfilename.cc
##line 58 - PROGRAMS = filename
##line 62 - filename : $(OBJS)
##
##
##############################################################################
##############################################################################
##############################################################################
include StandardDefinitions.mk

#Site Specific  Flags
ifeq ($(strip $(BOOST_ROOT)),)
	BOOST_ROOT = /usr/local/include
endif
SYSINCLUDES	= -I/usr/include -I$(BOOST_ROOT)
SYSLIBS         = -L/usr/lib
DLLSUF = ${DllSuf}
OBJSUF = ${ObjSuf}
SRCSUF = ${SrcSuf}

CXX = g++

#Generic and Site Specific Flags
CXXFLAGS     += $(INC_ARA_UTIL) $(SYSINCLUDES) 
LDFLAGS      += -g $(LD_ARA_UTIL) -I$(BOOST_ROOT) $(ROOTLDFLAGS) -L. 

# copy from ray_solver_makefile (removed -lAra part)

# added for Fortran to C++


LIBS	= $(ROOTLIBS) -lMinuit $(SYSLIBS) 
GLIBS	= $(ROOTGLIBS) $(SYSLIBS)


LIB_DIR = ./lib
INC_DIR = ./include

#ROOT_LIBRARY = libAra.${DLLSUF}

OBJS = Vector.o EarthModel.o IceModel.o Trigger.o Ray.o Tools.o Efficiencies.o Event.o Detector.o Position.o Spectra.o RayTrace.o RayTrace_IceModels.o signal.o secondaries.o Settings.o Primaries.o counting.o RaySolver.o Report.o eventSimDict.o plotting_example.o
CCFILE = Vector.cc EarthModel.cc IceModel.cc Trigger.cc Ray.cc Tools.cc Efficiencies.cc Event.cc Detector.cc Spectra.cc Position.cc RayTrace.cc signal.cc secondaries.cc RayTrace_IceModels.cc Settings.cc Primaries.cc counting.cc RaySolver.cc Report.cc plotting_example.cc
CLASS_HEADERS = Trigger.h Detector.h Settings.h Spectra.h IceModel.h Primaries.h Report.h Event.h secondaries.hh #need to add headers which added to Tree Branch

PROGRAMS = plotting_example

all : $(PROGRAMS) 
	
plotting_example : $(OBJS)
	$(LD) $(OBJS) $(LDFLAGS)  $(LIBS) -o $(PROGRAMS) 
	@echo "done."

#The library
$(ROOT_LIBRARY) : $(LIB_OBJS) 
	@echo "Linking $@ ..."
ifeq ($(PLATFORM),macosx)
# We need to make both the .dylib and the .so
		$(LD) $(SOFLAGS)$@ $(LDFLAGS) $(G77LDFLAGS) $^ $(OutPutOpt) $@
ifneq ($(subst $(MACOSX_MINOR),,1234),1234)
ifeq ($(MACOSX_MINOR),4)
		ln -sf $@ $(subst .$(DllSuf),.so,$@)
else
		$(LD) -dynamiclib -undefined $(UNDEFOPT) $(LDFLAGS) $(G77LDFLAGS) $^ \
		   $(OutPutOpt) $(subst .$(DllSuf),.so,$@)
endif
endif
else
	$(LD) $(SOFLAGS) $(LDFLAGS) $(G77LDFLAGS) $(LIBS) $(LIB_OBJS) -o $@
endif

##-bundle

#%.$(OBJSUF) : %.$(SRCSUF)
#	@echo "<**Compiling**> "$<
#	$(CXX) $(CXXFLAGS) -c $< -o  $@

%.$(OBJSUF) : %.C
	@echo "<**Compiling**> "$<
	$(CXX) $(CXXFLAGS) $ -c $< -o  $@

%.$(OBJSUF) : %.cc
	@echo "<**Compiling**> "$<
	$(CXX) $(CXXFLAGS) $ -c $< -o  $@

# added for fortran code compiling
%.$(OBJSUF) : %.f
	@echo "<**Compiling**> "$<
	$(G77) -c $<


eventSimDict.C: $(CLASS_HEADERS)
	@echo "Generating dictionary ..."
	@ rm -f *Dict* 
	rootcint $@ -c ${INC_ARA_UTIL} $(CLASS_HEADERS) ${ARA_ROOT_HEADERS} LinkDef.h

clean:
	@rm -f *Dict*
	@rm -f *.${OBJSUF}
	@rm -f $(LIBRARY)
	@rm -f $(ROOT_LIBRARY)
	@rm -f $(subst .$(DLLSUF),.so,$(ROOT_LIBRARY))	
	@rm -f $(TEST)
#############################################################################

NFOUR=1024

EXPONENT=21
NNU=300 // number of neutrino events
NNU_PASSED=10 // number of neutrino events that are allowed to pass the trigger
ONLY_PASSED_EVENTS=0 // 0 (default): AraSim throws NNU events whether or not they pass; 1: AraSim throws events until the number of events that pass the trigger is equal to NNU_PASSED (WARNING: may cause long run times if reasonable values are not chosen)
NOISE_WAVEFORM_GENERATE_MODE=0 // generate new noise waveforms for each events
NOISE_EVENTS=16 // number of pure noise waveforms
TRIG_ANALYSIS_MODE=0 // 0 = signal + noise, 1 = signal only, 2 = noise only
DETECTOR=1 // ARA stations 1 to 7
NOFZ=1
core_x=10000
core_y=10000

TIMESTEP=5.E-10 // value for 2GHz actual station value
TRIG_WINDOW=1.E-7 // 100ns which is actual testbed trig window
POWERTHRESHOLD=-6.06 // 100Hz global trig rate for 3 out of 16 ARA stations

POSNU_RADIUS=3000
V_MIMIC_MODE=0 // 0 : global trig is located center of readout windows
DATA_SAVE_MODE=0 // 2 : don't save any waveform informations at all
DATA_LIKE_OUTPUT=0 // 0 : don't save any waveform information to eventTree
BORE_HOLE_ANTENNA_LAYOUT=0
SECONDARIES=0

TRIG_ONLY_BH_ON=0
CALPULSER_ON=0
USE_MANUAL_GAINOFFSET=0
USE_TESTBED_RFCM_ON=0
NOISE_TEMP_MODE=0
TRIG_THRES_MODE=0
READGEOM=0 // reads geometry information from the sqlite file or not (0 : don't read)

TRIG_MODE=0 // use vpol, hpol separated trigger mode. by default N_TRIG_V=3, N_TRIG_H=3. You can change this values

number_of_stations=1
core_x=10000
core_y=10000

DETECTOR=1
DETECTOR_STATION=2
DATA_LIKE_OUTPUT=0

NOISE_WAVEFORM_GENERATE_MODE=0 // generates new waveforms for every event
NOISE=0 //flat thermal noise
NOISE_CHANNEL_MODE=0 //using different noise temperature for each channel
NOISE_EVENTS=16 // number of noise events which will be store in the trigger class for later use

ANTENNA_MODE=1
APPLY_NOISE_FIGURE=0

# .bashrc

# Source global definitions
if [ -f /etc/bashrc ]; then
	. /etc/bashrc
fi

module load cmake/3.11.4
module load gnu/7.3.0
export CC=`which gcc`
export CXX=`which g++`

export BOOST_ROOT=/fs/project/PAS0654/shared_software/anita/owens_pitzer/build/boost_build
export LD_LIBRARY_PATH=${BOOST_ROOT}/stage/lib:$LD_LIBRARY_PATH
export BOOST_LIB=$BOOST_ROOT/stage/lib
export LD_LIBRARY_PATH=$BOOST_LIB:$LD_LIBRARY_PATH

export ROOTSYS=/fs/project/PAS0654/shared_software/anita/owens_pitzer/build/root
eval 'source /fs/project/PAS0654/shared_software/anita/owens_pitzer/build/root/bin/thisroot.sh'