These scripts allow you to do thousands of ShelfMC runs while varying certain parameters of your choice. As is, the attenuation length, reflection, ice thickness, firn depth, station depth is varied over certain rages; in total, the whole Parameter Space Scan does 5250 runs on a cluster like Ruby or KingBee. The scripts and instructions are attached below. 

#!/bin/bash
#Jude Rajasekera 3/20/17

tmpShelfmc=$HOME/shelfmc/ShelfMC #location of Shelfmc
runName=ParamSpaceScanDir #name of run

cd $tmpShelfmc #move to home directory

if [ ! -f ./jobList.txt ]; then #see if there is an existing job file
    echo "Creating new job List"
    for L in {500..1000..100} #attenuation length 500-1000
    do
	for R in {0..100..25} #Reflection Rate 0-1
	do
            for T in {500..2900..400} #Thickness of Ice 500-2900
            do
		for FT in {60..140..20} #Firn Thinckness 60-140
		do
                    for SD in {0..200..50} #Station Depth
                    do
		    echo "cd $runName/Atten_Up$L/ReflectionRate$R/IceThick$T/FirnThick$FT/StationDepth$SD" >> jobList.txt
                    done
		done
            done
	done
    done
else 
    echo "Picking up from last job"
fi


numbLeft=$(wc -l < ./jobList.txt)
while [ $numbLeft -gt 0 ];
do
    jobs=$(showq | grep "rajasekera.3") #change username here
    echo '__________Current Running Jobs__________'
    echo "$jobs"
    echo ''
    runningJobs=$(showq | grep "rajasekera.3" | wc -l) #change unsername here
    echo Number of Running Jobs = $runningJobs 
    echo Number of jobs left = $numbLeft
    if [ $runningJobs -le 6 ];then
	line=$(head -n 1 jobList.txt)
	$line
	echo Submit Job && pwd
	qsub run_shelfmc_multithread.sh
	cd $tmpShelfmc
	sed -i 1d jobList.txt
    else
	echo "Full Capacity"
    fi
    sleep 1
    numbLeft=$(wc -l < ./jobList.txt)
done