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  ID Date Author Subject Project Text Attachments
  50   Wed Jun 12 12:10:05 2024 Jacob WeilerHow to install AraSim on OSCSoftware# Installing AraSim on OSC

Readding this because I realized
it was deleted when I went looking for it
  
  49   Thu Sep 14 22:30:06 2023 Jason YaoHow to profile a C++ programSoftwareThis guide is modified from section (d)
of the worksheet inside Module 10 of
Phys 6810 Computational Physics (Spring 2023).
 hello_world.cppmake_hello_world 
  48   Thu Jun 8 16:29:45 2023 Alan Salcedo Doing IceCube/ARA coincidence analysis These documents contain information on
how to run IceCube/ARA coincidence simulations
and analysis. All technical information of
 IceCube_ARA_Coincidence_Analysis___Technical_Note.pdfICARA_Coincident_Events_Introduction.pptxICARA_Analysis_Template.ipynbIceCube_Relative_to_ARA_Stations.ipynb 
  47   Mon Apr 24 11:51:42 2023 William LuszczakPUEO simulation stack installation instructionsSoftwareThese are instructions I put together as
I was first figuring out how to compile PueoSim/NiceMC.
This was originally done on machines running
  
  46   Tue Aug 2 14:34:15 2022 Alex MOSC License Request Some programs on OSC require authorized
access to use in the form of a license.
The license will be automatically read if
 User_Software_Agreement.pdf 
  45   Fri Feb 4 13:06:25 2022 William Luszczak"Help! AnitaBuildTools/PueoBuilder can't seem to find FFTW!"SoftwareDisclaimer: This might not be the best
solution to this problem. I arrived here
after a lot of googling and stumbling across
  
  Draft   Fri Feb 28 13:09:53 2020 Justin FlahertyInstalling anitaBuildTools on OSC-Owens (Revised 2/28/2020)     
  Draft   Fri Jan 31 10:43:52 2020 Jorge TorresMounting ARA software on OSC through CernVM File SystemSoftwareOSC added ARA's CVMFS repository on
Pitzer and Owens. This has been already done
in UW's cluster thanks to Ben Hokanson-Fasig
  
  42   Tue Nov 5 16:22:16 2019 Keith McBrideNASA Proposal fellowshipsOtherHere is a useful link for astroparticle
grad students related proposals from NASA:

 
  
  41   Fri Oct 11 13:43:35 2019 Amy How to start a new undergrad hireOtherIf an undergrad has been working with the
group on a volunteer basis, they will need
that clarified, so that they have not up
  
  40   Thu Jul 25 16:50:43 2019 Dustin NguyenAdvice (not mine) on writing HEP stuff OtherPDF of advice by Andy Buckley (U Glasgow) on
writing a HEP thesis (and presumably HEP
papers too) that was forwarded by John
 thesis-writing-gotchas.pdf 
  39   Thu Jul 11 10:05:37 2019 Justin FlahertyInstalling PyROOT for Python 3 on OwensSoftwareIn order to get PyROOT working for Python
3, you must build ROOT with a flag that specifies
Python 3 in the installation.  This
  
  38   Wed May 15 00:38:54 2019 Brian ClarkGet a quick start with AraSim on oscSoftwareFollow the instructions in the attached
"getting_started_with_ara.pdf"
file to download AraSim, compile it, generate
 8x 
  37   Tue May 14 10:38:08 2019 Amy Getting started with AraSimSoftwareAttached is a set of slides on Getting
Started with QC, a simulation monitoring
project.  It has instructions on getting
 intro_to_qc.pdfScreenshot_from_2019-05-14_10-54-48.pngScreenshot_from_2019-05-14_10-56-19.png 
  36   Mon Mar 4 14:11:07 2019 Jorge TorresSubmitting arrays of jobs on OSCAnalysisPBS has the option of having arrays of
jobs in case you want to easily submit
multiple similar jobs. The only difference
  
  35   Tue Feb 26 19:07:40 2019 Lauren EnnesserValgrind command to suppress ROOT warnings valgrind --suppressions=$ROOTSYS/etc/valgrind-root.supp
./myCode

If you use valgrind to identify
  
  34   Tue Feb 26 16:19:20 2019 Julie RollaAll of the group GitHub account linksSoftwareANITA Binned Analysis: https://github.com/osu-particle-astrophysics/BinnedAnalysis

GENETIS Bicone: https://github.com/mclowdus/BiconeEvolution

GENETIS Dipole: https://github.com/hchasan/XF-Scripts
  
  33   Mon Feb 11 21:58:26 2019 Brian ClarkGet a quick start with icemc on OSCSoftwareFollow the instructions in the attached
"getting_started_with_anita.pdf"
file to download icemc, compile it, generate
 7x 
  32   Mon Dec 17 21:16:31 2018 Brian ClarkRun over many data files in parallel To analyze data, we sometimes need to run
over many thousands of runs at once. To do
this in parallel, we can submit a job for
 demo.cxxrun.shrun_list.txtsubmit_jobs.sh 
  31   Thu Dec 13 17:33:54 2018 s prohiraparallel jobs on rubySoftwareOn ruby, users get charged for the full
node, even if you aren't using all 20
cores, so it's a pain if you want to
 test.pbseffvol.pbs 
  30   Tue Nov 27 09:43:37 2018 Brian ClarkPlot Two TH2Ds with Different Color PalettesAnalysisSay you want to plot two TH2Ds with on
the same pad but different color paletettes?

This is possible, but requires
 demo.ccMakefiletest.png 
  29   Fri Nov 9 00:44:09 2018 Brian ClarkTransfer files from IceCube Data Warehouse to OSC Brian had to move ~7 TB of data from the
IceCube data warehouse to OSC.

To do this, he used the gridftp
  
  28   Fri Oct 26 18:08:43 2018 Jorge TorresAnalyzing effective volumesAnalysisAttaching some scripts that help processing
the effective volumes. This is an extension
of what Brian Clark did in a previous post
 veff.shveff_aeff2.Cveff_aeff2.mkmake_plot.py 
  27   Mon Oct 1 19:06:59 2018 Brian ClarkCode to Compute Effective Volumes in AraSimAnalysisHere is some C++ code and an associated
makefile to find effective volumes from AraSim
output files.
 veff.ccveff.mk 
  26   Sun Aug 26 19:23:57 2018 Brian ClarkGet a quick start with AraSim on OSC OakleySoftwareThese are instructions I wrote for Rishabh
Khandelwal to facilitate a "fast"
start on Oakley at OSC. It was to help him
 forRishabh.tar.gz 
  25   Wed Aug 1 11:37:10 2018 Andres MedinaFlux OrderingHardwareBought 951 Non-Resin Soldering Flux. This
is the preferred variety. This could be found
on this website 
  
  24   Wed Jun 6 17:48:47 2018 Jorge TorresHow to build ROOT 6 on an OSC cluster Disclaimer: I wrote this for Owens, which
I think will also work on Pitzer. I recommend
following Steven's instructions, and
  
  23   Wed Jun 6 08:54:44 2018 Brian Clark and Oindree BanerjeeHow to Access Jacob's ROOT6 on Oakley Source the attached env.sh file. Good to
go!
 env.sh 
  22   Sun Apr 29 21:44:15 2018 Brian ClarkAccess Deep ARA Station DataAnalysisQuick C++ program for pulling waveforms
out of deep ARA station data. If you are
using AraRoot, you would put this inside
 plot_deep_station_event.cxx 
  21   Fri Mar 30 12:06:11 2018 Brian ClarkGet icemc running on Kingbee and UnitySoftwareSo, icemc has some needs (like Mathmore)
and preferably root 6 that aren't installed
on kingbeen and unity.
  
  20   Tue Mar 20 09:24:37 2018 Brian ClarkGet Started with Making Plots for IceMCSoftwareFirst, anyone not
familiar with the command line should familiarize
  
  19   Mon Mar 19 12:27:59 2018 Brian ClarkHow To Do an ARA Monitoring ReportOtherSo, ARA has five stations down in the ice
that are taking data. Weekly, a member of
the collaboration checks on the detectors
  
  18   Tue Dec 12 17:38:36 2017 Brian ClarkData Analysis in R from day w/ Brian ConnollyAnalysisOn Nov 28 2017, Brian Connolly came and
visited and taught us how to do basic data
analysis in R.
 pca_and_lda.Rdata.zip 
  17   Mon Nov 20 08:31:48 2017 Brian Clark and Oindree BanerjeeFit a Function in ROOTAnalysisSometimes you need to fit a function to
a histogram in ROOT. Attached is code for
how to do that in the simple case of a power
 fitSnr.Chstripe1snr.rootstripe1snrfit.png 
  16   Thu Oct 26 08:44:58 2017 Brian ClarkFind Other Users on OSCOtherOkay, so our group has two "project"
spaces on OSC (the Ohio Supercomputer). The
first is for Amy's group, and is a project
  
  Draft   Thu Sep 21 14:30:18 2017 Julie RollaUsing/Running XF Below I've attached a video with some
information regarding running XF. Before
you start, here's some important information
  
  14   Mon Sep 18 12:06:01 2017 Oindree BanerjeeHow to get anitaBuildTool and icemc set up and workingSoftwareFirst try reading and following the instructions
here

https://u.osu.edu/icemc/new-members-readme/
  
  Draft   Sun Sep 17 20:05:29 2017 Spoorthi NagasamudramSome basic      
  12   Fri Aug 25 12:34:47 2017 Amy Connolly - posting stuff from Todd ThompsonHow to run coffeeOtherOne really useful thing in here is how
to describe "Value Added" to visitors.
 guidelines.pdf 
  Draft   Fri Jul 28 17:57:06 2017 Brian Clark and Ian Best       
  10   Thu May 11 14:38:10 2017 Sam StaffordSample OSC batch job setupSoftwareBatch jobs on OSC are initiated through
the Portable Batch System (PBS).  This
is the recommended way to run stuff on OSC
 osc_batch_jobs.txt 
  9   Thu May 11 13:43:46 2017 Sam StaffordNotes on installing icemc on OSCSoftware   icemc_setup_osc.txt 
  Draft   Thu Apr 27 18:28:22 2017 Sam Stafford (Also Slightly Jacob)Installing AnitaTools on OSCSoftwareJacob Here, Just want to add how I got
AnitaTools to see FFTW:

1) echo $FFTW3_HOME to find where
 OSC_build.txt 
  7   Tue Apr 25 10:35:43 2017 Jude RajasekeraShelfMC Parameter Space ScanSoftwareThese scripts allow you to do thousands
of ShelfMC runs while varying certain parameters
of your choice. As is, the attenuation
 ParameterSpaceScan_instructions.txtsetup.shscheduler.sh 
  6   Tue Apr 25 10:22:50 2017 Jude RajasekeraShelfMC Cluster RunsSoftwareDoing large runs of ShelfMC can be time
intensive. However, if you have access to
a computing cluster like Ruby or KingBee,
 multithread_shelfmc.shmultithread_shelfmc_walkthrough.txt 
  5   Tue Apr 18 12:02:55 2017 Amy ConnollyHow to ship to PoleHardwareHere is an old email thread about how to
ship a station to Pole.

 
 Shipping_stuff_to_Pole__a_short_how_to_from_you_would_be_nice_.pdfARA_12-13_UH_to_CHC_Packing_List_Box_2_of_3.pdfARA_12-13_UH_to_CHC_Packing_List_Box_1_of_3.pdfARA_12-13_UH_to_CHC_Packing_List_Box_3_of_3.pdfIMG_4441.jpg 
  4   Fri Mar 31 11:36:54 2017 Brian Clark, Hannah Hasan, Jude Rajasekera, and Carl Pfendner Installing Software Pre-Requisites for Simulation and Analysis SoftwareInstructions on installing simulation software
prerequisites (ROOT, Boost, etc) on Linux
computers.
 installation.pdfInstallation-Instructions.tar.gz 
  3   Wed Mar 22 18:01:23 2017 Brian ClarkAdvice for Using the Ray Trace CorrelatorAnalysisIf you are trying to use the Ray Trace
Correlator with AraRoot, you will probably
encounter some issues as you go. Here is
  
  2   Thu Mar 16 10:39:15 2017 Amy ConnollyHow Do I Connect to the ASC VPN Using Cisco and Duo? For Mac and Windows:

https://osuasc.teamdynamix.com/TDClient/KB/ArticleDet?ID=14542
For Linux, in case some of your students
  
  1   Thu Mar 16 09:01:50 2017 Amy ConnollyElog instructionsOtherLog into kingbee.mps.ohio-state.edu first,
then log into radiorm.physics.ohio-state.edu.

From Keith Stewart 03/16/17:
  
ELOG V3.1.5-fc6679b