Follow the instructions in the attached "getting_started_with_anita.pdf" file to download icemc, compile it, generate results, and plot those results.

# .bashrc

source bashrc_anita.sh

# we also want to set two more environment variables that ANITA needs
# you should update ICEMC_SRC_DIR and ICEMC_BUILD_DIR to wherever you
# downloaded icemc too

export ICEMC_SRC_DIR=/path/to/icemc #change this line!
export ICEMC_BUILD_DIR=/path/to/icemc #change this line!
export DYLD_LIBRARY_PATH=${ICEMC_SRC_DIR}:${ICEMC_BUILD_DIR}:${DYLD_LIBRARY_PATH}

# .bashrc

# Source global definitions
if [ -f /etc/bashrc ]; then
	. /etc/bashrc
fi

module load cmake/3.11.4
module load gnu/7.3.0
export CC=`which gcc`
export CXX=`which g++`

export BOOST_ROOT=/fs/project/PAS0654/shared_software/anita/owens_pitzer/build/boost_build
export LD_LIBRARY_PATH=${BOOST_ROOT}/stage/lib:$LD_LIBRARY_PATH
export BOOST_LIB=$BOOST_ROOT/stage/lib
export LD_LIBRARY_PATH=$BOOST_LIB:$LD_LIBRARY_PATH

export ROOTSYS=/fs/project/PAS0654/shared_software/anita/owens_pitzer/build/root
eval 'source /fs/project/PAS0654/shared_software/anita/owens_pitzer/build/root/bin/thisroot.sh'

# Makefile for the ROOT test programs.  # This Makefile shows nicely how to compile and link applications
# using the ROOT libraries on all supported platforms.
#
# Copyright (c) 2000 Rene Brun and Fons Rademakers
#
# Author: Fons Rademakers, 29/2/2000

include Makefile.arch

################################################################################
# Site specific flags
################################################################################
# Toggle these as needed to get things to install

#BOOSTFLAGS = -I boost_1_48_0
# commented out for kingbee and older versions of gcc
ANITA3_EVENTREADER=1

# Uncomment to enable healpix 
#USE_HEALPIX=1

# Uncomment to disable explicit vectorization (but will do nothing if ANITA_UTIL is not available) 
#VECTORIZE=1


# The ROOT flags are added to the CXXFLAGS in the .arch file
# so this should be simpler...
ifeq (,$(findstring -std=, $(CXXFLAGS)))
	ifeq ($(shell test $(GCC_MAJOR) -lt 5; echo $$?),0)
		ifeq ($(shell test $(GCC_MINOR) -lt 5; echo $$?),0)
			CXXFLAGS += -std=c++0x
		else
			CXXFLAGS += -std=c++11
		endif
	endif
endif

################################################################################

# If not compiling with C++11 (or later) support, all occurrences of "constexpr"
# must be replaced with "const", because "constexpr" is a keyword
# which pre-C++11 compilers do not support.
# ("constexpr" is needed in the code to perform in-class initialization
# of static non-integral member objects, i.e.:
#		static const double c_light = 2.99e8;
# which works in C++03 compilers, must be modified to:
#		static constexpr double c_light = 2.99e8;
# to work in C++11, but adding "constexpr" breaks C++03 compatibility.
# The following compiler flag defines a preprocessor macro which is
# simply:
#		#define constexpr const
# which replaces all instances of the text "constexpr" and replaces it
# with "const".
# This preserves functionality while only affecting very specific semantics.

ifeq (,$(findstring -std=c++1, $(CXXFLAGS)))
	CPPSTD_FLAGS = -Dconstexpr=const
endif



# Uses the standard ANITA environment variable to figure
# out if ANITA libs are installed
ifdef ANITA_UTIL_INSTALL_DIR
	ANITA_UTIL_EXISTS=1
	ANITA_UTIL_LIB_DIR=${ANITA_UTIL_INSTALL_DIR}/lib
	ANITA_UTIL_INC_DIR=${ANITA_UTIL_INSTALL_DIR}/include
	LD_ANITA_UTIL=-L$(ANITA_UTIL_LIB_DIR)
	LIBS_ANITA_UTIL=-lAnitaEvent -lRootFftwWrapper
	INC_ANITA_UTIL=-I$(ANITA_UTIL_INC_DIR)
	ANITA_UTIL_ETC_DIR=$(ANITA_UTIL_INSTALL_DIR)/etc
endif

ifdef ANITA_UTIL_EXISTS
	CXXFLAGS += -DANITA_UTIL_EXISTS
endif

ifdef VECTORIZE
	CXXFLAGS += -DVECTORIZE -march=native -fabi-version=0
endif

ifdef ANITA3_EVENTREADER
	CXXFLAGS += -DANITA3_EVENTREADER
endif

ifdef USE_HEALPIX
	CXXFLAGS += -DUSE_HEALPIX `pkg-config --cflags healpix_cxx`
	LIBS  += `pkg-config --libs healpix_cxx` 
endif


################################################################################

GENERAL_FLAGS = -g -O2 -pipe -m64 -pthread
WARN_FLAGS = -W -Wall -Wextra -Woverloaded-virtual
# -Wno-unused-variable -Wno-unused-parameter -Wno-unused-but-set-variable

CXXFLAGS += $(GENERAL_FLAGS) $(CPPSTD_FLAGS) $(WARN_FLAGS) $(ROOTCFLAGS) $(INC_ANITA_UTIL)

DBGFLAGS  = -pipe -Wall -W -Woverloaded-virtual -g -ggdb -O0 -fno-inline

DBGCXXFLAGS = $(DBGFLAGS) $(ROOTCFLAGS) $(BOOSTFLAGS)
LDFLAGS  += $(CPPSTD_FLAGS) $(LD_ANITA_UTIL) -I$(BOOST_ROOT) -L.
LIBS += $(LIBS_ANITA_UTIL)

# Mathmore not included in the standard ROOT libs
LIBS += -lMathMore

DICT = classdict

OBJS = vector.o position.o earthmodel.o balloon.o icemodel.o signal.o ray.o Spectra.o anita.o roughness.o secondaries.o Primaries.o Tools.o counting.o $(DICT).o Settings.o Taumodel.o screen.o GlobalTrigger.o ChanTrigger.o SimulatedSignal.o EnvironmentVariable.o source.o  random.o

BINARIES = test_plot$(ExeSuf)

################################################################################

.SUFFIXES: .$(SrcSuf) .$(ObjSuf) .$(DllSuf)

all:            $(BINARIES)

$(BINARIES): %: %.$(SrcSuf) $(OBJS)
		$(LD) $(CXXFLAGS) $(LDFLAGS) $(OBJS) $< $(LIBS) $(OutPutOpt) $@
		@echo "$@ done"


.PHONY: clean
clean:
		@rm -f $(BINARIES)


%.$(ObjSuf) : %.$(SrcSuf) %.h
	@echo "<**Compiling**> "$<
	$(LD) $(CXXFLAGS) -c $< -o $@